Course data management with iRODS and Compute

In this course you will learn how to manage data efficiently with the data management framework iRODS (integrated Rule-Oriented Data System) and to build computational pipelines on an high performance computing infrastructure. For who?  Librarians, data stewards, ICT managers and researchers…

Workshop: R2 – Genomics analysis and visualization platform

R2 is a free, publicly accessible web-based genomics analysis and visualization platform (http://r2.amc.nl) allowing biomedical researchers, without bioinformatics training, to integrate clinical and genomics data. The R2 platform serves nearly 2.000.000 pages a year and has been cited in PubMed…

BioSB course: Algorithms for Genomics

Comparative genomics aims to compare large sets of genomes in order to understand and explain differences in traits of an organism. Contemporary methods are powered by fundamental algorithms and data structures, which are efficient and scale to large data sets.…

BioSB course: Machine learning for bioinformatics and systems biology

Course overview Modern biology is a data-rich science, driven by our ability to measure the detailed molecular characteristics of cells, organs, and individuals at many different levels. Interpretation of these large-scale biological data requires the detection of statistical dependencies and…

RNA-seq workshop for beginners: from sequences to visualization using Galaxy and R

the Gallantries team (Freiburg Galaxy Team, DTL, the Netherlands eScience Center, and Erasmus MC in the Netherlands, and INAB CERTH in Greece) offers a Galaxy workshop on RNA-seq data analysis on October 7-9th. The workshop will cover: Galaxy introduction Introduction to High-Throughput Sequencing…

Getting started on the high-throughput data processing platform

Vastly increasing data volumes and data complexity imply that researchers require novel solutions to large scale cluster computing. This workshop aims to provide an introduction and hands-on experience with our new solution to this problem: “a new and versatile platform…

MGC course ‘Next Generation Sequencing data analysis’

The aim of the course is to give a broad overview of the different applications of NGS with a focus on different ways to analyse the data. Presentations will discuss specifically the different choices available for data analysis, why a…

Summer School on Image Analysis for Plant Phenotyping

Are you looking for a complete overview of image analysis techniques for automatic plant phenotyping? The course will provide a mixture of underlying theory and practical hands-on training. During the course you will have the opportunity to work on real…

Integrative X-omics analyses empowering personalized healthcare

In this course you will receive high profile lectures and practical training on the integrated use of molecular-omics technologies in personalized prevention, diagnostics and treatment, to optimize your experimental and analysis strategies. Molecular indicators for health, disease and response to…

Cluster Computing for Life Sciences

Learn basic skills in high-performance computing. In this workshop you will learn how to work more efficiently with your computer via the command line, how to automate your data analysis pipelines and how to use compute cluster. The workshop content…