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Netherlands eScience Center

Contact Details

Netherlands eScience Center

Netherlands eScience Center, Science Park 140, 1098 XG Amsterdam

http://www.esciencecenter.nl

Dr. T. Bakker

t.bakker@esciencecenter.nl

0031 (0)20 4604770

Hotel Description

The eScience Center develops scientific software for Dutch academia. This is done by funding and participating in data-intensive research projects across all scientific disciplines. We welcome reseachers to contact us to explore possible collaboration.

Our core expertises are in the fields of :

  • optimized data handling (real-time data analysis, database optimization, data-interoperability, combining structured and unstructured data)
  • efficient computing (high-performance and distributed computing (e.g. cloud), heterogeneous computing, efficient algorithms, accelerator hardware (e.g. GPUs))
  • big data analytics (data exploration, analysis, data mining, machine learning, text analysis, natural language processing, statistics and visualization)

The Netherlands eScience Center was launched in 2011 as a unique collaboration between NWO, the principle Dutch scientific funding body and SURF, the Dutch higher education and research partnership for ICT. The center was initiated as a direct response to the Dutch government’s request to develop a sustainable, coherent and cost-effective eScience environment and digital infrastructure across all scientific disciplines.

Bioinformatics
Public
  • Biodiversity & ecology
  • Biomedical & health
  • Agri & Food
  • Industrial biotech
  • Machine Learning (e.g. deep learning)
  • Orchestrated computing (parallel execution of complex computational workflows)
  • Linked data / fair data technologies
  • Metabolomics & proteomics data annotation
  • Data visualization
  • Xenobiotic metabolism
  • Drug design
  • Neuroimaging

Expertise and Track Record

43500984092 Semantic Analysis of Radiology Reports utilizing Lexicon and Embedded Knowledge with Y. Wee (Maastricht UMC)

Emetabolomics. Website: https://www.emetabolomics.org
The eScience Center developed an insilico method for automatic chemical annotation of metabolomics data

3d echem. Website: https://3d-e-chem.github.io
The eScience Center integrated several tools for structure-based prediction of protein-ligand interactions into the Knime workflow environment

TraIT (Translational Research IT – CTMM). Website: http://www.ctmm-trait.nl
The eScience Center is projectlead for WP6 Deployment: implementing a service desk, support and training organization for TraIT medical informatics, imaging and bioinformatics tools

VLPB (Virtual Lab for Plant Breeding – TTI Groene Genetica). Website: https://www.esciencecenter.nl/project/the-virtual-laboratory-for-plant-breeding
The eScience Center implements (with UVA and WUR) next generation precision breeding tools

Biomarker Boosting (RUN, EMC, VUmc, UM). Website: https://www.esciencecenter.nl/project/biomarker-boosting
The eScience Center implements (with project partners) a multi-center medical image analysis pipeline

3D printing of human body parts (VUmc). Website: https://www.esciencecenter.nl/redactional/young-escientist-2016

Overview of all our projects: https://www.esciencecenter.nl/projects
List of all publications: http://research.esciencecenter.nl
Overview of our GitHub repositories: https://nlesc.github.io

  • 3D-e-Chem-VM: Structural Cheminformatics Research Infrastructure in a Freely Available Virtual Machine. Website: http://pubs.acs.org/doi/abs/10.1021/acs.jcim.6b00686
  • Substructure-based annotation of high-resolution multistage MSn spectral trees. Website: http://onlinelibrary.wiley.com/doi/10.1002/rcm.6364/full

Platform of eScience/Data Research Centers in the Netherlands
https://escience-platform.nl

Plan-Europe – Platform of National eScience Centers in Europe
https://plan-europe.eu/

Hotel Characteristics

  • 40 eScience Research Engineers / Research Software Engineers

80

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